I believe that your car is OBD II comliant.
There are three service connectors for Honda modern cars: DLC(16-pin), MCIC(3-pin) and MES(2-pin). I think the two connectors what you saw are MCIC and MES. Both of them are on the fuse/relay box, right? Go and check if there is a 16-pin connector near the fuse/relay box.