Thank you again sargeants. I did fire it up last night late and it's working.
Just for the record for anyone else;
On page 27 of the V2.1 manual for jumper 3.2.2 setting; there is no square pins shown. However the way they oriented the jumper on the page matches the board as sargeants stated above so the top PIN in all three diagrams should be shown as the square PIN.
The other issue with the manual is on page 28 for setting JP4, the top jumper diagram shows the square pin on the left and the bottom shows the square pin on the right. The square pin should be on the left in both diagrams. This one is not too bad because the board itself clearly labels PIN 1