Also having this issue. When my pc close it exits all applications (RR etc) and then I get a message waiting to close mapmonkey.exe. I have to click "End Now" for the computer to shutdown properly.
I have found a workaround for those who are interested:
In the registry - HKU\.Default\Control Panel\Desktop
set the following values-
AutoEndTasks = 1
WaitToKillApp = 500 (5sec Default 2000=20sec)
This will exit all non responsive programs when you shutdown.
Car PC -Jetway J7F2WE2G, 4Gb CF Boot, 32Gb CF Data, 1Gb Ram, M2-ATX PS, 8" 800x600 TS, SiLabs USB Radio, Garmin GPS15L, Ublox SBR-LS DR GPS, Fusion Brain, Multibay Card Reader, Panasonic Slotload DVD+-RW, Custom Fab Steel Case
Car- 1988 Nissan Patrol 4WD