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Beside the pseudo universality of usb pin header, the page you link is pretty clear and cover most of the possible cases you may enconter. It's mostly a matter of reading your mobo manual, and figuring what is the situation.
And if the pinout is really different you always can rewire the plug :use a pin to lift gently the plastic tabs that hold the connectors in the plug, pul them out of the plastic part, replug where there suposed to be to suit your mobo pinout
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Now Galileo is real. Muhahahahaha :p
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