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you may want to run an extension from the 5V rail of the PSU to the shoebox - im pretty sure the audigy is gonna need external power, along with the HDD (may be 12V, so maybe need to run a full molex). Also - you may want to get a USB "repeater", which strengthens the USB signal. Also, a simple SDC (mpegbox.com) may solve your problems with cutting power to the USB. Just use it as a relay.
Good luck!
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