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From what I've read, HandBrake seems to be the equivalent of ImToo DVD ripper. HandBrake uses external codecs to compress video and from what you've said, you've got Handbrake using ffmpeg for encoding.
My reasons for wanting to convert to mp4(Nero Digital) where file size and encoding speed. ffmpeg is supposedly faster at encoding, but you may want to try divx for compatibility testing. Unless you're a true film buff, you shouldn't notice a difference in video quality.
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