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sounds like you could be losing the hard drive. Listen to your HDD to see if it is clicking on and off or spinning up and down erratically or when it seems to hang. this could be caused by a lack of power (eg when the CPU powers up or other things kick in) or a lose Molex connector (take it apart and close the connections) or a dodgy IDE cable. The cables could have been disturbed when you changed the mobo.
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or skiing or diving or doing somthing else fun!
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